Changelog

Source: NEWS.md

serocalculator (development version)

serocalculator 1.2.0

• Added test-summary.pop_data test

• Modified test-est.incidence test

• Added stratification to summary.pop_data

• Added verbose option for check_pop_data(), changing default behavior to avoid printing an OK message.

serocalculator 1.1.0

• Renamed llik() to log_likelihood()

• Renamed fdev() to f_dev()

• Renamed df.to.array() to df_to_array()

• Renamed getAdditionalData() to get_additional_data()

• Removed clean_pop_data() function

• Remove clean_pop_data() dependency functions documentation examples

• Added age, value, id and standardize arguments to load_pop_data()

• Added the following methods to pop_data class:

  • set_age()
  • set_value()
  • set_id()
  • get_age()
  • get_value()
  • get_id()
  • get_age_var()
  • get_value_var()
  • get_id_var()

• Added additional warnings to load_pop_data()

• Added scales::pseudo_log_trans() to autoplot.pop_data() to avoid log 0

• Added test-est.incidence-status.R test to check output when standardize option is FALSE on load_pop_data()

• Replaced column name comparison on check_pop_data() to use attribute name on pop_data class

serocalculator 1.0.1

• added n_points argument to plot_curve_params_one_ab()
• Added type = "age-scatter" option for autoplot.pop_data()

serocalculator 1.0.0

• Moved underlying methods to serocalculator vignette

serocalculator 0.5.0

• Spell-checking of function documentation and tutorial articles.

• Added functions and methods:

  • load_pop_data()
  • check_pop_data()
  • summary.pop_data()
  • autoplot.pop_data()
  • load_curve_params()

• Renamed graph.decay.curves.by() to autoplot.curve_params()

serocalculator 0.4.0

• plot() methods have been renamed to autoplot(), matching general convention for ggplot2-based graphics.

• added visualization of curve parameters

• sim.cs() now has format argument to specify long or wide format for output.

serocalculator 0.3.2

Fixed bug in passing antigen_isos from est.incidence.by() to est.incidence().

serocalculator 0.3.1

Rolled back required R version from 4.2 to 4.1

serocalculator 0.3.0

• Fixed stability and documentation-clarity issues after initial tester feedback.

serocalculator 0.2.0 (never formally incremented in DESCRIPTION)

• Added new vignettes.

serocalculator 0.1.0

Forking from the seroincidence package and adding Teunis et al 2020 approach.