Load antibody decay curve parameter samples

Usage

load_curve_params(file_path, antigen_isos = NULL)

Arguments

file_path: path to an RDS file containing MCMC samples of antibody decay curve parameters y0, y1, t1, alpha, and r, stored as a data.frame() or tibble::tbl_df
antigen_isos: character() vector of antigen isotypes to be used in analyses

Value

a curve_params object (a tibble::tbl_df with extra attribute antigen_isos)

Examples

curve <- load_curve_params("https://osf.io/download/rtw5k/")

print(curve)
#> # A tibble: 20,000 × 7
#>    antigen_iso  iter     y0     y1    t1     alpha     r
#>    <fct>       <int>  <dbl>  <dbl> <dbl>     <dbl> <dbl>
#>  1 HlyE_IgA        1  2.48    63.5  9.52 0.000581   1.75
#>  2 HlyE_IgG        1  3.04   164.   6.55 0.00457    1.17
#>  3 LPS_IgA         1  0.748  103.   4.98 0.00308    1.58
#>  4 LPS_IgG         1  0.941  320.   6.14 0.00166    1.41
#>  5 Vi_IgG          1  8.46  4348.   3.07 0.0000340  1.06
#>  6 HlyE_IgA        2  3.86   288.   1.27 0.000459   2.66
#>  7 HlyE_IgG        2  1.82   154.  10.8  0.000921   1.30
#>  8 LPS_IgA         2  1.76   852.   2.49 0.000126   2.91
#>  9 LPS_IgG         2  0.434   20.6  4.29 0.00122    1.37
#> 10 Vi_IgG          2 18.8    345.   3.48 0.000142   1.02
#> # ℹ 19,990 more rows