Package index • serodynamics

Simulate case data

sim_case_data(): Simulate longitudinal case follow-up data from a homogeneous population

Prepare data for analysis

serodynamics_example(): Get path to an example file

load_data(): load and format data

as_case_data(): Convert data into case_data

prep_data(): prepare data for JAGs

Visualize data

autoplot(<case_data>): Plot case data

Prepare auxiliary JAGS inputs

prep_priors(): Prepare priors

initsfunction(): JAGS chain initialization function

Model seroreponse

run_mod(): Run Jags Model

Model diagnostics

plot_jags_dens(): Density Plot Diagnostics

plot_jags_Rhat(): Rhat Plot Diagnostics

plot_jags_trace(): Trace Plot Diagnostics

plot_jags_effect(): Plot Effective Sample Size Diagnostics

Postprocess JAGS output

postprocess_jags_output(): Postprocess JAGS output

Summarize seroresponse model estimates

post_summ(): Summary Table of Jags Posterior Estimates

Example data sets

serodynamics_example(): Get path to an example file

nepal_sees: SEES Typhoid data

nepal_sees_jags_post: SEES Typhoid run_mod jags output