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load and format data

Source: R/load_data.r
load_data.Rd

to add

Usage

load_data(
  datapath = "inst/extdata/",
  datafile = "TypoidCaseData_github_09.30.21.csv"
)

Arguments

datapath

path to data folder

datafile

data file name

Value

a list with the following elements:

  • smpl.t = time since symptom/fever onset for each participant, max 7 visits

  • logy = log antibody response at each time-point (max 7) for each of 7 biomarkers for each participant

  • ntest is max number of biomarkers

  • nsmpl = max number of samples per participant

  • nsubj = number of study participants

  • ndim = number of parameters to model(y0, y1, t1, alpha, shape)

  • my.hyp, prec.hyp, omega and wishdf are all parameters to describe the shape of priors for (y0, y1, t1, alpha, shape)