Changelog
Source:NEWS.md
serodynamics (development version)
- Initial CRAN submission.
New features
<<<<<<< HEAD * Creating default print.sr_model function for sr_model class (#114) * Including fitted and residual values as data frame in run_mod output. (#101) * Added plot_predicted_curve() with support for faceting by multiple IDs (#68) * Replacing old data object with new run_mod output (#102) * Adding class assignment to run_mod output (#76) * Making prep_priors modifiable (#78) * Changes to run_mod() output: - Taking out include_subs as an input option, default will include all individuals - Making a single tbl as output - All other pieces will be attributes. * Changes to run_mod() (#79): - jags.post now optionally included in output, as specified by argument with_post - all subjects now optionally included in curve_params output component, as specified by argument include_subs * Diagnostic function to produce R-hat dotplots with stratification (#67) * Added function for summarizing estimates in a table (#74) * Diagnostic trace plot function with strat (#64) * Diagnostic function to produce effective sample size plots with stratification (#66) * Diagnostic function to produce density plots with stratification (#27) * Added SEES data set data folder and documentation (#41) * Fixing SEES data and added jags_post for SEES (#63) * as_case_data() now creates column visit_num (#47, #50) * Added postprocess_jags_output() to API (#33) * Added initsfunction() to API (#37) * Added participant IDs as names to nsmpl element of prep_data() output (#34) * Added initsfunction() to API (#37) * Added as_case_data() to API (#31) * Added prep_priors() to API (#30) * Added autoplot() method for case_data objects (#28) * Added examples for sim_pop_data(), autoplot.case_data() (#18) * Added attributes as a return to the run_mod function (#24) * exported run_mod() function (#22) * Function that runs jags with option of stratification included. (#14) * Changed package name to serodynamics. (#19, #20)
Developer-facing changes
- Switched ggmcmc dependency from GitHub dev version to CRAN v1.5.1.2 (#135)
- vectorized
ab()function (#116) - Added
lintr::undesirable_function_linter()to.lintr.R(#81) - Reformatted
.lintras R file (following https://github.com/r-lib/lintr/issues/2844#issuecomment-2776725389) (#81) - Set shortcut pipe to be base pipe (#80)
- Added snapshot test for
run_mod() - Clarified
prep_data()internals using dplyr (#34) - Removed “.R” suffix from jags model files to prevent them from getting linted as R files (#34)
- Added
dobson.Rmdminimal vignette (#36) - Overall cleaning to get checks working (#28)
- Added units tests for
prep_data(),sim_case_data()(#18) - Added various GitHub Actions (#10, #15, #18)