Changelog • serodynamics

serodynamics (development version)

Updating density diagnostic function (#71)
Changes to run_mod() (#79):
- jags.post now optionally included in output, as specified by argument with_post
- all subjects now optionally included in curve_params output component, as specified by argument include_subs
Diagnostic function to produce R-hat dotplots with stratification (#67)
Added function for summarizing estimates in a table (#74)
Diagnostic trace plot function with strat (#64)
Diagnostic function to produce effective sample size plots with stratification (#66)
Diagnostic function to produce density plots with stratification (#27)
Added SEES data set data folder and documentation (#41)
Fixing SEES data and added jags_post for SEES (#63)
as_case_data() now creates column visit_num (#47, #50)
Added postprocess_jags_output() to API (#33)
Added initsfunction() to API (#37)
Added participant IDs as names to nsmpl element of prep_data() output (#34)
Added initsfunction() to API (#37)
Added as_case_data() to API (#31)
Added prep_priors() to API (#30)
Added autoplot() method for case_data objects (#28)
Added examples for sim_pop_data(), autoplot.case_data() (#18)
Added attributes as a return to the run_mod function (#24)
exported run_mod() function (#22)
Function that runs jags with option of stratification included. (#14)
Changed package name to serodynamics. (#19, #20)

None yet

Added lintr::undesirable_function_linter() to .lintr.R (#81)
Reformatted .lintr as R file (following https://github.com/r-lib/lintr/issues/2844#issuecomment-2776725389) (#81)
Set shortcut pipe to be base pipe (#80)
Added snapshot test for run_mod()
Clarified prep_data() internals using dplyr (#34)
Removed “.R” suffix from jags model files to prevent them from getting linted as R files (#34)
Added dobson.Rmd minimal vignette (#36)
Overall cleaning to get checks working (#28)
Added units tests for prep_data(), sim_case_data() (#18)
Added various GitHub Actions (#10, #15, #18)

Started development.